Table of Contents (final) Part I. Introduction Chapter 1: Overview M. Tomita Part II. Analytical Methods for Metabolome Sciences Chapter 2: Development and Application of Capillary Electrophoresis–Mass Spectrometry Methods to Metabolomics T. Soga Chapter 3: Application of Electrospray Ionization Mass Spectrometry for Metabolomics R. Taguchi Chapter 4: High-Performance Liquid Chromatography and Liquid Chromatography/Mass Spectrometry Analyses of Metabolites in Microorganisms H. Miyano Chapter 5: Metabolome Profiling of Human Urine with Capillary Gas Chromatography/Mass Spectrometry T. Kuhara Chapter 6: Metabolic Profiling by Fourier-Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR-MS) and Electrospray Ionization Quadrupole Time-Of-Flight Mass Spectrometry (ESI-Q-TOF-MS) K. Hirayama Chapter 7: Metabolome Analysis by Capillary Electrophoresis L. Jia and S. Terabe Chapter 8: High-Performance Liquid Chromatography for Metabolomics: High-Efficiency Separations Utilizing Monolithic Silica Columns T. Ikegami, H. Kobayashi, H. Kimura, V.V. Tolstikov, O. Fiehn, and N. Tanaka Part III. Applications of Metabolome Analysis to Biosciences Chapter 9: Combined Analysis of Metabolome and Transcriptome: Catabolism in Bacillus subtilis T. Nishioka, K. Matsuda, and Y. Fujita Chapter 10: Metabolomics in Arabidopsis thaliana K. Saito Chapter 11: Lipidomics: Metabolic Analysis of Phospholipids R. Taguchi Chapter 12: Chemical Diagnosis of Inborn Errors of Metabolism and Metabolome Analysis of Urine by Capillary Gas Chromatography/Mass Spectrometry T. Kuhara Part IV. Metabolome Informatics Chapter 13: Introduction to the ARM Database: Database on Chemical Transformations inMetabolism for Tracing Pathways M. Arita Chapter 14: The Genome-Based E-CELL Modeling (GEM) System K. Arakawa, Y. Yamada, K. Shinoda, Y. Nakayama, and M. Tomita Chapter 15: Hybrid Dynamic/Static Method for Large-Scale Simulation of Metabolism and its Implementation to the E-CELL System Y. Nakayama Part V. Metabolomics and Medical Sciences Chapter 16: Metabolomics and Medical Sciences T. Nishioka Index