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Biophysical Approaches for the Study of Membrane Structure Part B

Specificaties
Gebonden, blz. | Engels
Elsevier Science | e druk, 2024
ISBN13: 9780443295669
Rubricering
Elsevier Science e druk, 2024 9780443295669
Onderdeel van serie Methods in Enzymology
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Samenvatting

Biophysical Approaches for the Study of Membrane Structure, Part B, Volume 701 explores lipid membrane asymmetry and lateral heterogeneity. A burst of recent research has shown that bilayers whose leaflets differ in their physical properties—such as composition, phase state, or lateral stress—exhibit many fascinating new characteristics, but also pose a host of challenges related to their creation, characterization, simulation, and theoretical description. Chapters in this new release include Characterization of domain formation in complex membranes: Analyzing the bending modulus from simulations of complex membranes, The density-threshold affinity: Calculating lipid binding affinities from unbiased Coarse-Grain Molecular Dynamics simulations, and much more.

Additional sections cover Uncertainty quantification for trans-membrane stresses and moments from simulation, Using molecular dynamics simulations to generate small-angle scattering curves and cryo-EM images of proteoliposomes, Binary Bilayer Simulations for Partitioning Within Membranes, Modeling Asymmetric Cell Membranes at All-atom Resolution, Multiscale remodeling of biomembranes and vesicles, Building complex membranes with Martini 3, Predicting lipid sorting in curved bilayer membranes, Simulating asymmetric membranes using P21 periodic boundary conditions, and many other interesting topics.

Specificaties

ISBN13:9780443295669
Taal:Engels
Bindwijze:Gebonden

Inhoudsopgave

Preface<br>Tobias Baumgart and Markus Deserno<br>1. Characterization of domain formation in complex membranes: Analyzing the bending modulus from simulations of complex membranes<br>Rainer A. Böckmann and Marius F.W. Trollmann<br>2. The density-threshold affinity: Calculating lipid binding affinities from unbiased Coarse-Grain Molecular Dynamics simulations<br>Grace Brannigan, Jahmal Ennis, Ezry Santiago-McRae and Jesse W Sandberg<br>3. Uncertainty quantification for trans-membrane stresses and moments from simulation<br>Markus Deserno and Samuel Lincoln Foley<br>4. Binary Bilayer Simulations for Partitioning Within Membranes<br>Wonpil Im, Richard Walter Pastor and Soohyung Park<br>5. Modeling Asymmetric Cell Membranes at All-atom Resolution<br>Jeffrey Klauda, Jessica Bodosa and Anthony Pane<br>6. Multiscale remodeling of biomembranes and vesicles<br>Reinhard Lipowsky<br>7. Building complex membranes with Martini 3<br>Siewert-Jan Marrink, Helgi Ingolfur Ingolfsson, Tugba N. Ozturk, Melanie König, Timothy S. Carpenter, Kasper Busk Pedersen and Tsjerk A. Wassenaar<br>8. Predicting lipid sorting in curved bilayer membranes<br>Luca Monticelli, Cecile Hilpert and Jackson Crowley<br>9. Simulating asymmetric membranes using P21 periodic boundary conditions<br>Richard Walter Pastor, Amy Rice, Bernard Brooks and Samarjeet Prasad<br>10. Free Energy Calculations for Membrane Morphological Transformations and Insights to Physical Biology and Oncology<br>Ravi Radhakrishnan, Tobias Baumgart, Kshitiz Parihar, Seung-Hyun Brianna Ko, Wei Guo, Paul Janmey, Ryan Bradley, Phillip Taylor and Natesan Ramakrishnan<br>11. Modeling the mechanochemical feedback for membrane-protein interactions using a continuum mesh model<br>Padmini Rangamani and Christopher Lee<br>12. Lattice-based mesoscale simulations and mean-field theory of cell membrane adhesion<br>Bartosz Różycki, Jingeli Hu, Long Li, Lukasz Milewski and Jie Gao<br>13. Dynamic framework for large-scale modelling of membranes and peripheral proteins<br>Mohsen Sadeghi and David Rosenberger<br>14. Computing the spontaneous curvature of dynamic lipid complexes in molecular dynamics simulations<br>Alexander Sodt, Amirali Hossein and Kayla Sapp<br>15. Non-affine deformation analysis and 3D packing defects: A new way to probe membrane heterogeneity in molecular simulations<br>Anand Srivastava and Madhusmita Tripathy<br>16. Analyzing curvature and lipid distributions in molecular dynamics simulations of complex membranes<br>Peter Tieleman
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        Biophysical Approaches for the Study of Membrane Structure Part B