<p>1. Characterizing the Role of Exoribonucleases in the Control of Microbial Gene Expression: Differential RNA-Seq<br>Vânia Pobre and Cecília M. Arraiano<br>2. Conformational Studies of Bacterial Chromosomes by High-Throughput Sequencing Methods<br>Virginia S. Lioy and Frédéric Boccard<br>3. Large-Scale Measurement of mRNA Degradation in Escherichia coli: To Delay or Not to Delay<br>Sandrine Laguerre, Ignacio González, Sébastien Nouaille, Annick Moisan, Nathalie Villa-Vialaneix, Christine Gaspin, Marie Bouvier, Agamemnon J. Carpousis, Muriel Cocaign-Bousquet and Laurence Girbal<br>4. FASTBAC-Seq: Functional AnalysiS of Toxin–Antitoxin Systems in BACteria by Deep Sequencing<br>Sara Masachis, Nicolas J. Tourasse, Sandrine Chabas, Olivier Bouchez and Fabien Darfeuille<br>5. The Challenges of Genome-Wide Studies in a Unicellular Eukaryote With Two Nuclear Genomes<br>Sandra Duharcourt and Linda Sperling<br>6. CLIP-Seq in Bacteria: Global Recognition Patterns of Bacterial RNA-Binding Proteins<br>Liis Andresen and Erik Holmqvist<br>7. High-Resolution Profiling of NMD Targets in Yeast<br>Feng He, Alper Celik, Richard Baker and Allan Jacobson<br>8. Generation of a Metagenomics Proximity Ligation 3C Library of a Mammalian Gut Microbiota<br>Théo Foutel-Rodier, Agnès Thierry, Romain Koszul and Martial Marbouty<br>9. Genome-Wide Mapping of Yeast Retrotransposon Integration Target Sites<br>Anastasia Barkova, Amna Asif-Laidin and Pascale Lesage<br>10. Genome-Wide Quantitation of Protein Synthesis Rates in Bacteria<br>Grace E. Johnson and Gene-Wei Li<br>11. On the Prowl: An In Vivo Method to Identify RNA Partners of a sRNA<br>Marie-Claude Carrier, Claire Morin and Eric Massé<br>12. Analysis of Bacterial Transcription by "Massively Systematic Transcript End Readout," MASTER<br>Irina O. Vvedenskaya, Seth R. Goldman and Bryce E. Nickels<br>13. Transcriptomic Approaches for Studying Quorum Sensing in Vibrio cholerae<br>Roman Herzog and Kai Papenfort<br>14. In Vitro Study of the Major Bacillus subtilis Ribonucleases Y and J<br>Liliana Mora, Saravuth Ngo, Soumaya Laalami and Harald Putzer<br>15. Mapping 5′-Ends and Their Phosphorylation State With EMOTE, TSS-EMOTE, and nEMOTE<br>Peter Redder<br>16. MS2-Affinity Purification Coupled With RNA Sequencing Approach in the Human Pathogen Staphylococcus aureus<br>David Lalaouna, Emma Desgranges, Isabelle Caldelari and Stefano Marzi<br>17. Noncoding RNAs in Archaea: Genome-Wide Identification and Functional Classification<br>Anne Buddeweg, Michael Daume, Lennart Randau and Ruth A. Schmitz<br>18. Methodology for Ribosome Profiling of Key Stages of the Caulobacter crescentus Cell Cycle<br>James R. Aretakis, Nadra Al-Husini and Jared M. Schrader<br>19. Transcriptome-Wide Analysis of Protein–RNA and RNA–RNA Interactions in Pathogenic Bacteria<br>Jai J. Tree, Kenn Gerdes and David Tollervey<br>20. Profiling RNA Polymerase II Phosphorylation Genome-Wide in Fission Yeast<br>Tea Kecman, Dong-Hyuk Heo and Lidia Vasiljeva<br>21. Toward Cell Type-Specific In Vivo Dual RNA-Seq<br>Lutz Frönicke, Denise N. Bronner, Mariana X. Byndloss, Bridget McLaughlin, Andreas J. Bäumler and Alexander J. Westermann<br>22. Genomic Analysis of DNA Double-Strand Break Repair in Escherichia coli<br>A.M. Mahedi Hasan, Benura Azeroglu and David R.F. Leach</p>
