Riboswitches as Targets and Tools

Specificaties
Gebonden, blz. | Engels
Elsevier Science | e druk, 2015
ISBN13: 9780128011232
Rubricering
Elsevier Science e druk, 2015 9780128011232
Onderdeel van serie Methods in Enzymology
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Samenvatting

This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This volume covers research methods in riboswitches as targets and tools and contains sections on such topics as constructing and optimizing artificial riboswitches, live cell imaging and intracellular sensors with artificial riboswitches, conditional control of gene expression with artificial riboswitches, using artificial riboswitches for protein evolution and pathway optimization, and anti-riboswitch drug screens.

Specificaties

ISBN13:9780128011232
Taal:Engels
Bindwijze:Gebonden

Inhoudsopgave

1. Design of Transcription Regulating Riboswitches<br>Sven Findei, Manja Wachsmuth, Mario M¨orl, and PeterF. Stadler<br>2. Ligand-Dependent Exponential Amplification of Self-Replicating RNA Enzymes<br>Charles Olea, Jr. and Gerald F. Joyce<br>3. Design of Modular “Plug-and-Play” Expression Platforms Derived From Natural Riboswitches for Engineering Novel Genetically Encodable RNA Regulatory Devices<br>Jeremiah J. Trausch and Robert Batey<br>4. Integrating and Amplifying Signal from Riboswitch Biosensors<br>Michael S. Goodson, Svetlana V. Harbaugh, Yaroslav G. Chushak and Nancy Kelley-Loughnane<br>5. Simple identification of two causes of noise in an aptazyme system by monitoring cell-free transcription. <br>Norikazu Ichihashi, Shungo Kobori, Tetsuya Yomo<br>6. Engineering of ribosomal shunt-modulating eukaryotic ON riboswitches by using a cell-free translation system<br>Atsushi Ogawa<br>7. Chemo-enzymatic Synthesis of Selectively 13C/15N-labeled RNA for NMR Structural and Dynamics Studies<br>Luigi J. Alvarado, Andrew P. Longhini, Regan LeBlanc, Bin Chen, Christoph Kreutz and T. Kwaku Dayie<br>8. In Vitro Analysis of Riboswitch-Spinach Aptamer Fusions as Metabolite-Sensing Fluorescent Biosensors<br>Colleen A. Kellenberger and Ming C. Hammond<br>9. Assaying Break and Nick-Induced Homologous Recombination in Mammalian Cells Using the DR-GFP Reporter and Cas9 Nucleases.<br>Lianne E.M. Vriend , Maria Jasin and Przemek M. Krawczyk<br>10. Adapting CRISPR/Cas9 for Functional Genomics Screens<br>Abba Malina , Alexandra Katigbak , Regina Cencic , Rayelle Itoua Maïga , Francis Robert, Hisashi Miura and Jerry Pelletier<br>11. The Icrispr Platform for Rapid Genome Editing in Human Pluripotent Stem Cells<br>Zengrong Zhu, Federico González and Danwei Huangfu<br>12. Using Riboswitches to Regulate Gene Expression and Define Gene Function in Mycobacteria<br>Erik Van Vlack and Jessica C. Seeliger<br>13. Controlling Expression of Genes in the Unicellular Alga Chlamydomonas Reinhardtii With a Vitamin-Repressible Riboswitch<br>Silvia Ramundo and Jean-David Rochaix<br>14. Conditional Control of Gene Expression by Synthetic Riboswitches in Streptomyces Coelicolor<br>Martin M. Rudolph, Michael-Paul Vockenhuber und Beatrix Suess<br>15. Engineering of Ribozyme-Based Aminoglycoside Switches of Gene Expression by in Vivo Genetic Selection in Saccharomyces Cerevisiae<br>Benedikt Klauser, Charlotte Rehm and  Jörg S. Hartig<br>16. Kinetic Folding Design of Aptazyme-Regulated Expression Devices (aREDs) as Riboswitches for Metabolic Engineering<br>David Sparkman-Yager, Rodrigo A Correa-Rojas and James M Carothers<br>17. Riboselector: Riboswitch-Based Synthetic Selection Device to Expedite Evolution of Metabolite-Producing Microorganisms<br>Sungho Jang, Jina Yang, Sang Woo Seo and Gyoo Yeol Jung<br>18. Fluorescence Assays for Monitoring RNA-Ligand Interactions and Riboswitch-Targeted Drug Discovery Screening<br>J. Liu, C. Zeng, S. Zhou, J.A. Means and  J.V. Hines<br>19. Monitoring Ribosomal Frameshifting as a Platform to Screen Anti-Riboswitch Drug Candidates<br>Chien-Hung Yu and René C. L. Olsthoorn
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