Molecular Evolution, Producing the Biochemical Data, Part B

Isolation of DNA from plants with large amounts of secondary metabolites<br>Nucleic Acid Isolation from Environmental Aqueous Samples <br>Nucleic acid isolation from ecological samples—vertebrate gut flora<br>Nucleic acid isolation from ecological samples — fungal associations, lichens<br>Nucleic acid isolation from ecological samples—fungal associations, mycorrhizae<br>Nucleic acid isolation from ecological samples—animal scat and other associated materials<br>Isolation and analysis of DNA from archaeological, clinical and natural history specimens<br>Isolation and characterization of proteins from archaeological and ancient specimens<br>Animal Phylogenomics: Multiple Interspecific Genome Comparisons<br>ISSR techniques for evolutionary biology<br>Use of Amplified Fragment Length Polymorphism (AFLP) markers in surveys of vertebrate diversity<br>Use of AFLP markers in surveys of arthropod diversity<br>Use of AFLP markers in surveys of plant diversity<br>Isolating microsatellite DNA loci<br>Use of microsatellites for parentage and kinship analyses in animals<br>Use of capillary array electrophoresis single strand conformational polymorphism analysis to estimate genetic diversity of candidate genes in germplasm collections<br>Ribosomal RNA probes and microarrays: Their potential use in assessing microbial biodiversity<br>The role of geographic analyses in locating, understanding and using plant genetic diversity<br>In Situ Hybridization of Phytoplankton Using Fluorescently-Labelled rRNA Probes<br>Sequencing and comparing whole mitochondrial genomes of animals<br>Methods for obtaining and analyzing whole chloroplast genome sequences<br>Construction of Bacterial Artificial Chromosome libraries for use in phylogenetic studies <br>Comparative EST analyses in plant systems<br>Isolation of genes from plant Y chromosomes<br>Preparation of samples for comparative studies of plant chromosomes using in situ hybridization methods<br>Preparation of samples for comparative studies of arthropod chromosomes: visualization, in situ hybridization, and genome size estimation<br>Experimental methods for assaying natural transformation and inferring horizontal gene transfer<br>Use of confocal microscopy in comparative studies of vertebrate morphology <br>PrimerSelect: A transcriptome-wide oligonucleotide primer pair design program for kinetic RT-PCR-based transcript profiling<br>Detecting differential expression of parental or progenitor alleles in genetic hybrids and allopolyploids<br>genome-wide analysis of gene expression changes in polyploids<br>Designing experiments using spotted microarrays to detect gene regulation differences within and among species<br>Methods for studying the evolution of plant reproductive structures: Comparative gene expression techniques<br>Developing antibodies to synthetic peptides based on comparative DNA sequencing of multigene families<br>Application of ancestral protein reconstruction in understanding protein function: GFP-like proteins<br>Advances in phylogeny reconstruction from gene order and content data<br>Analytical methods for detecting paralogy in molecular datasets<br>Analytical methods for studying the evolution of paralogs using duplicate gene data sets<br>Supertree construction in the genomic age<br>Maximum-likelihood methods for phylogeny estimation<br>Context Dependence and Co-Evolution among Amino Acid Resideue in Proteins