Phylogenomics

<p>PART I. GENERAL TOPICS AND FOUNDATIONS<br>1. Phylogenomic analysis and the origin and early evolution of viruses<br>2. Application of Next Generation Sequencing for Genetic and Phenotypic Studies of Bacteria <br>3. Genomic insight into deciphering bacterial outbreaks <br>4. Drug resistance in bacteria, molecular mechanisms and evolution <br>5. Virulence evolution of bacterial species <br>PART II. METHODS IN THE PHYLOGENOMICS <br>6. Modeling evolutionary changes of k-mer patterns of bacterial genomes <br>7. Clock Rates and Bayesian Evaluation of Temporal Signal <br>8. Microbial evolutionary reconstruction in the presence of mosaic sequences<br>9. Tools for SNP calling and the way to deal with big datasets<br>PART III. PHYLOGENOMICS OF SPECIFIC PATHOGENS <br>10. Phylogenomics of Yersinia pestis <br>11. Salmonella Phylogenomics<br>12. The phylogenomics of Shigella spp. <br>13. Phylogenomic diversity within Corynebacterium diphtheriae, a re-emerging threat to global public health<br>14. Phylogenomics of the East Asian lineage of Mycobacterium tuberculosis<br>15. Mycobacterium kansasii<br>16. Taxonomy and phylogenomics of Leptospira <br>17. Phylogenomics and evolution of Measles virus<br>18. Phylogenomics of HIV-1<br>19. Respiratory syncytial virus<br>20. Phylogenomics of Flaviviruses <br>21. How clonal is Staphylococcus aureus? <br>22. Genomic research of ancient pathogens in Central Asia<br>23. Subspecific nomenclature of the Cryptococcus neoformans/gattii complex and the predominant clonal evolution (PCE) model <br>24. Phylogenomics of Mycobacterium leprae <br><br> </p>