Synthetic Biology, Part A

<p>Section I. Measuring and Engineering Central Dogma Processes</p> <ol> <p> <li>Sequence-specificity and Energy Landscapes of DNA-binding Molecules</li> <p>Joshua R. Tietjen, Leslie J. Donato, Devesh Bhimisaria and Aseem Z. Ansari</p> <p> <li>Promoter Reliability in Modular Transcriptional Networks</li> <p>Rajat Anand, Navneet Rai and Mukund Thattai</p> <p> <li>The Analysis of ChIP-seq Data</li> <p>Wenxiu Ma and Wing Hung Wong</p> <p> <li>Using DNA Microarrays to Assay Part Function</li> <p>Virgil A. Rhodius and Carol A. Gross</p> <p> <li>Orthogonal gene expression in Escherichia coli</li> <p>Wenlin An and Jason Chin</p> <p> <li>Directed evolution of promoters and tandem gene arrays for customizing RNA synthesis rates and regulation</li> <p>Keith E.J. Tyo, Elke Nevoigt and Gregory Stephanopoulos</p> <p>Section II. Device and System Design, Optimization, and Debugging</p> <p> <li>Design and Connection of Robust Genetic Circuits </li> <p>Ron Weiss</p> <p> <li>Engineering RNAi circuits</li> <p>Yaakov Benenson</p> <p> <li>From SELEX to cell: Dual selections for synthetic riboswitches</li> <p>Joy Sinha, Shana Topp, and Justin P. Gallivan</p> <p> <li>Using noisy gene expression mediated by engineered adenovirus to probe signaling dynamics in mammalian cells</li> <p>Jeffrey V. Wong, Guang Yao, Joseph R. Nevins and Lingchong You</p> <p> <li>De novo design and construction of an inducible gene expression system in mammalian cells</li> <p>Maria Karlsson, Wilfried Weber and Martin Fussenegger</p> <p> <li>BioBuilding: Using banana-scented bacteria to teach synthetic biology</li> <p>James Dixon and Natalie Kuldell</p> <p>Section III. Device Measurement, Optimization, and Debugging</p> <p> <li>Use of Fluorescence Microscopy to Analyze Genetic Circuit Dynamics</li> <p>Gürol Süel</p> <p> <li>Microfluidics for synthetic biology: From design to execution</li> <p>M. S. Ferry, I. A. Razinkov, J. Hasty</p> <p> <li>Plate-based assays for light-regulated gene expression systems</li> <p>Jeffrey J. Tabor</p> <p> <li>Spatiotemporal control of small GTPases with light using the LOV domain</li> <p>Yi I. Wu, Xiaobo Wang, Li He, Denise Montell and Klaus M. Hahn</p> <p> <li>Light Control of Plasma Membrane Recruitment using the Phy—PIF system</li> <p>Jared E. Toettcher, Delquin Gong, Wendell A. Lim, Orion D. Weiner</p> <p> <li>Synthetic Physiology: Strategies for Adapting Tools from Nature for Genetically-Targeted Control of Fast Biological Processes</li> <p>Ed Boyden</p> <p>Section IV. Devices for Metabolic Engineering</p> <p> <li>Metabolic Pathway Flux Enhancement by Synthetic Protein Scaffolding</li> <p>John E. Dueber and Weston R. Whitaker</p> <p> <li>A Synthetic Iterative Pathway for ketoacid elongation</li> <p>C. R. Shen, J. C. Liao</p> <p>Section V. Expanding Chasses</p> <p> <li>Synthetic Biology in Streptomyces bacteria</li> <p>Marnix Medema, Rainer Breitling and Eriko Takano</p> <p> <li>Methods for Engineering Sulfate Reducing Bacteria of the Genus Desulfovibrio</li> <p>Kimberly L. Keller, Judy D. Wall and Swapnil Chhabra</p> <p> <li>Modification of the Genome of Rhodobacter sphaeroides and Construction of Synthetic Operons</li> <p>Paul R. Jaschke, Rafael G. Saer, Stephan Noll and J. Thomas Beatty</p> <p> <li>Synthetic Biology in Cyanobacteria: Engineering and Analyzing Novel Functions</li> <p>Thorsten Heidorn, Daniel Camsund, Hsin-Ho Huang, Pia Lindberg, Paulo Oliveira, Karin Stensjö, and Peter Lindblad</p> <p> <li>Developing a Synthetic Signal Transduction System in Plants</li> <p>Kevin J. Morey, Mauricio S. Antunes, Kirk D. Albrecht, Tessa A. Bowen, Jared F. Troupe, Keira L. Havens and June I. Medford</p> <p> <li>Lentiviral Vectors to Study Stochastic Noise in Gene Expression</li> </ol> <p>Kate Franz, Abhyudai Singh, and Leor S. Weinberger</p>